Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11575248 chr12:56735990 G/T 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs115804187 chr7:158652756 T/G 0 176 25.53 19.83 3.17 KM Plot
PCPG rs11583130 chr1:56400111 A/G 4.65E-5 175 25.47 26.27 15.8 KM Plot
PCPG rs11586900 chr1:244148851 A/T 0.000372 170 26.65 24.1 15.8 KM Plot
PCPG rs11591052 chr1:244158772 G/A 0.000262 176 27.6 20.17 15.8 KM Plot
PCPG rs11592211 chr10:1076470 A/G 1.28E-5 175 24.62 29.57 13.38 KM Plot
PCPG rs11593181 chr10:131555141 A/T 6.44E-6 178 10.3 28.35 25.17 KM Plot
PCPG rs115979802 chr2:176205228 T/C 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs115995862 chr1:36924628 G/T 8.21E-5 175 25.53 25.97 10.3 KM Plot
PCPG rs1160393 chr2:209979254 T/C 5.41E-8 176 20.03 23.53 27.27 KM Plot
PCPG rs11606517 chr11:90016813 G/T 0.000472 173 24.53 27.4 19.78 KM Plot
PCPG rs11608814 chr12:6597129 C/T 0.000303 175 25.42 25.97 16.3 KM Plot
PCPG rs116097911 chr2:121545543 C/T 0.000238 175 25.53 24.37 59.77 KM Plot
PCPG rs11610712 chr12:6612883 G/C 0.000292 174 24.53 26.27 19.87 KM Plot
PCPG rs116312294 chr2:121545619 T/G 0.000214 177 25.53 24.37 59.77 KM Plot